GREIT3D_distribution | GREIT3D_distribution: create target distributions for 3D GREIT |
add_noise | ADD_NOISE: Add a given SNR to EIDORS data |
analytic_2d_circle | V = analytic_2d_circle(J, [s_h, s_i, b, a, angl]) |
calc_elem_current | calc_elem_current: calculate current vector in each FEM element |
calc_model_reduction | calc_model_reduction: calculate the fields for a reduced model |
check_c2f_quality | CHECK_C2F_QUALITY Check the coarse2fine mapping between two models |
convert_img_units | CONVERT_IMG_UNITS change image data units |
convhulln_clean | CONVHULLN_CLEAN: run convhulln and catch errors |
create_inclusion | USAGE: inhomg_img = create_inclusion( homg_img, inclusion_xyz, ... |
data_mapper | DATA_MAPPER maps img.params data to elem or node data |
deform_cylinder | fwd_mdl = deform_cylinder( fwd_mdl, niv); |
elec_rearrange | ELEC_REARRANGE: rearrange electrodes for given pattern |
elem_dim | ELEM_DIM: dimension of elements in space (are elements in 2D or 3D space) |
elem_select | ELEM_SELECT: select element fractions inside a function |
find_edge2edge_intersections | FIND_EDGE2EDGE_INTERSECTIONS intersections between edges of two models |
fix_model | FIX_MODEL: Add useful fields to a model |
fwd_model_from_v2 | CREATE EIDORS v3 fwd_model from the v2 variables |
get_elem_volume | GET_ELEM_VOLUME: VOL = get_elem_volume(fwd_model, map_node ) |
gmsh_stl2tet | GMSH_STL2TET creates a tetrahedral mesh from an stl file |
interp_mesh | INTERP_MESH: calculate interpolation points onto mdl elements |
linear_reorder | [fwd_model] = linear_reorder(fwd_model,ccw) |
mdl_dim | MDL_DIM: dimension of model space (are nodes in 2D or 3D space) |
mdl_normalize | MDL_NORMALIZE Check or set the normalize_measurements flag on a model. |
merge_meshes | MERGE_MESHES - merges two meshes based on common nodes |
mk_GREIT_model | MK_GREIT_MODEL: make EIDORS inverse models using the GREIT approach |
mk_analytic_c2f | MK_ANALYTIC_C2F: create a mapping matrix from coarse to fine FEM |
mk_approx_c2f | MK_APPROX_C2F: create a mapping matrix from coarse to fine FEM |
mk_c2f_circ_mapping | MK_C2F_CIRC_MAPPING: create a mapping matrix from circles/spheres to FEM |
mk_circ_tank | MK_CIRC_TANK: make a cylindrical tank FEM geometry in 2D or 3D |
mk_coarse_fine_mapping | MK_COARSE_FINE_MAPPING: create a mapping matrix from coarse to fine FEM |
mk_common_gridmdl | MK_COMMON_MODEL: make EIT on reconstruction grids (GREIT) |
mk_common_model | MK_COMMON_MODEL: make common EIT models |
mk_fmdl_from_nodes | MK_FMDL_FROM_NODES: create fmdl from nodes |
mk_geophysics_model | imdl = mk_geophysics_model(str, ne, [option]) |
mk_grid_c2f | MK_GRID_C2F - calculate a coarse2fine mapping for grid coarse models. |
mk_grid_model | MK_GRID_MODEL: Create reconstruction model on pixelated grid |
mk_hollow_electrode | MK_HOLLOW_ELECTRODE: remove nodes with indicated electrdoes |
mk_image | MK_IMAGE: create eidors image object |
mk_library_model | MK_LIBRARY_MODEL - FEM models based on library shapes |
mk_lung_image | MK_LUNG_IMAGE create an image with lung and heart contrasts from a model |
mk_pixel_slice | MK_PIXEL_SLICE create a pixel model to reconstruct on |
mk_stim_patterns | MK_STIM_PATTERNS: create an EIDORS stimulation pattern structure |
mk_tet_c2f | MK_TET_C2F - calculate a coarse2fine mapping for two tet-based models. |
mk_tet_c2f_bak | MK_TET_C2F - calculate a coarse2fine mapping for two tet-based models. |
mk_thorax_model | MK_THORAX_MODEL FEM models of the thorax |
mk_thorax_model_grychtol2016a | Builds the male thorax models from Grychtol, M�ler and Adler (2016) |
mk_tri2tet_c2f | MK_TRI2TET_C2F - coarse2fine mapping between tri-based and tet-based models |
mk_tri_c2f | MK_TRI_C2F - calculate a coarse2fine mapping for triangle-based models. |
mk_voxel_volume | MK_VOXEL_VOLUME create a voxel model to reconstruct on |
num_elecs | NUM_ELECS: number of electrodes attached to model |
num_elems | NUM_ELEMS: number of elemnts in a (fwd or inv model or image) |
num_nodes | NUM_NODES: number of elemnts in a (fwd or inv model or image) |
place_elec_on_surf | PLACE_ELEC_ON_SURF Place electrodes on the surface of a model |
point_in_tet | POINT_IN_TET test for points contained in elements |
point_in_triangle | POINT_IN_TRIANGLE tests points for membership in triangles |
reciprocity_idx | RECIPROCITY_IDX: find indices of stim, meas pairs that are recirocal |
remove_unused_nodes | REMOVE_UNUSED_NODES: identify and remove unused nodes in model |
select_imdl | SELECT_IMDL: select pre-packaged inverse model features |
shape_library | SHAPE_LIBRARY Common shapes for models |
simulate_2d_movement | SIMULATE_2D_MOVEMENT simulate rotational movement in 2D |
simulate_3d_movement | SIMULATE_3D_MOVEMENT simulate rotational movement in 3D |
simulate_movement | SIMULATE_MOVEMENT simulate small conductivity perturbations |
solve_RM_2Dslice | SOLVE_RM_2DSLICE: cut slices out of a 3D model |
stim_meas_list | STIM_MEAS_LIST: mk stimulation pattern from list of electrodes |
stim_pattern_geophys | STIM_PATTERN_GEOPHYS: Create Geophysical Stimulation Patterns |
supported_params | |
test_GREIT_model | |
tet_to_inequal | [A,b]=tet_to_inequal(v) |
thorax_geometry | THORAX_GEOMETRY: deform mesh to have a human thorax like shape |
triarea3d | [ta] = triarea3d(V); |
unpack_reconst_matrix | UNPACK_RECONST_MATRIX: unpack a compressed, stored reconstruction matrix |
valid_data | [pass, err_str] = valid_data(data) |
valid_fwd_model | [pass, err_str] = valid_fwd_model(fmdl, [type]) |
valid_img | [pass, err_str] = valid_img(img) |
valid_inv_model | [pass, err_str] = valid_fwd_model(imdl) |